Skip to main content

Table 1 RNA-Seq read filtering and mapping statistics

From: Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri

  Reproductive cells (three biological replicates) Somatic cells (three biological replicates) Reproductive cells Somatic cells In total
Replicate A Replicate B Replicate C Replicate A Replicate B Replicate C (Combined) (Combined)  
Total reads 40,833,921 40,714,201 57,614,694 36,648,572 65,483,065 46,370,011 139,162,816 148,501,648 287,664,464
Discarded reads 501,235 483,274 919,875 444,799 996,545 553,422 1,904,384 1,994,766 3,899,150
% Discarded reads 1.2% 1.2% 1.6% 1.2% 1.5% 1.2% 1.4% 1.4% 1.4%
QC passed reads 40,332,686 40,230,927 56,694,819 36,203,773 64,486,520 45,816,589 137,258,432 146,506,882 283,765,314
% QC passed reads 98.77% 98.81% 98.40% 98.79% 98.48% 98.81% 98.63% 98.66% 98.64%
Mapped reads 36,161,648 36,226,084 50,293,801 32,963,913 48,795,947 41,687,864 122,681,533 123,447,724 246,129,257
% Mapped reads (vs. QC passed) 89.66% 90.05% 88.71% 91.05% 75.67% 90.99% 89.38% 84.26% 86.74%
% Mapped reads (vs. total reads) 88.56% 88.98% 87.29% 89.95% 74.52% 89.90% 88.16% 83.13% 85.56%
  1. QC quality control