Fig. 6
Population genomic analyses of different pangenome gene categories. a Illumina whole-genome sequencing data of 123 Zymoseptoria tritici isolates covering the worldwide distribution range was analyzed for polymorphism in core, accessory, and singleton genes of the pangenome. The distribution shows the number of pangenome genes detected in each isolate. Gene presence was defined as showing no evidence for deletion (based on sequence coverage) and no loss-of-function (LOF) mutations (based on variant calling). b Non-synonymous nucleotide diversity (Ï€n) per gene. c Percentage of isolates showing evidence for a gene deletion. d Percentage of isolates showing evidence for LOF mutations. e Percentage of isolates showing evidence for an effector gene deletion. f Percentage of isolates showing evidence for LOF mutations in effector genes