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Table 1 Genome assembly and annotation statistics of the five complete Zymoseptoria tritici genomes

From: Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

Genomes assembly 1A5 1E4 3D1 3D7 IPO323
Genome size, Mb 39.7 38.6 40.7 37.9 39.7
Chromosomes, n 21 20 21 17 21
Gene annotation
Predicted genes 12,092 12,033 12,006 11,737 11,839
Average gene length, bp 1520.2 1524.2 1514.1 1502.6 1620.9
Average protein length, aa 467.5 468.3 466.4 457.2 487.8
Number of exons 29,716 30,015 29,033 30,399 30,068
Average exons per gene 2.46 2.49 2.42 2.59 2.54
Average exon length, bp 570.7 563.3 579.8 530.7 575.2
Number of introns 17,628 17,984 17,027 18,663 18,226
Average introns per gene 2.18 2.21 2.15 2.29 2.54
Average intron length, bp 80.7 79.7 79 80.6 91.6
Genes with introns 8099 8129 7925 8142 8044
Gene density, Mb–1 304.6 311.7 294.9 309.7 298.3
Protein functions
Proteins with Pfam domain 7403 7439 7431 7353 7375
Secreted protein 1025 1059 1014 1034 932
Predicted effectorsa 309 286 296 330 221
  1. aEffectors were predicted using the software EffectorP [50]