Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

Table 1 Genome assembly and annotation statistics of the five complete Zymoseptoria tritici genomes

Genomes assembly	1A5	1E4	3D1	3D7	IPO323
Genome size, Mb	39.7	38.6	40.7	37.9	39.7
Chromosomes, n	21	20	21	17	21
Gene annotation
Predicted genes	12,092	12,033	12,006	11,737	11,839
Average gene length, bp	1520.2	1524.2	1514.1	1502.6	1620.9
Average protein length, aa	467.5	468.3	466.4	457.2	487.8
Number of exons	29,716	30,015	29,033	30,399	30,068
Average exons per gene	2.46	2.49	2.42	2.59	2.54
Average exon length, bp	570.7	563.3	579.8	530.7	575.2
Number of introns	17,628	17,984	17,027	18,663	18,226
Average introns per gene	2.18	2.21	2.15	2.29	2.54
Average intron length, bp	80.7	79.7	79	80.6	91.6
Genes with introns	8099	8129	7925	8142	8044
Gene density, Mb^–1	304.6	311.7	294.9	309.7	298.3
Protein functions
Proteins with Pfam domain	7403	7439	7431	7353	7375
Secreted protein	1025	1059	1014	1034	932
Predicted effectors^a	309	286	296	330	221

ISSN: 1741-7007