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Table 2 Go enrichment table of gene expression in response to P. rettgeri in dissected flies

From: The Toll pathway underlies host sexual dimorphism in resistance to both Gram-negative and Gram-positive bacteria in mated Drosophila

GO term

Description

P valuea

FDR q valueb

Enrichment (N, B, n, b)c

GO:0006955

immune response

4.77 × 10–5

7.8 × 10–2

1.57 (331, 35, 181, 30)

GO:0050896

response to stimulus

6.02 × 10–5

4.92 × 10–2

1.31 (331, 95, 181, 68)

GO:0006959

humoral immune response

1.62 × 10–4

8.81 × 10–2

1.62 (331, 26, 181, 23)

GO:0002376

immune system process

2.44 × 10–4

9.99 × 10–2

1.49 (331, 38, 181, 31)

GO:0006950

response to stress

3.5 × 10–4

1.15 × 10–1

1.31 (331, 78, 181, 56)

GO:0009617

response to bacterium

3.69 × 10–4

1.01 × 10–1

1.45 (331, 43, 181, 34)

GO:0009605

response to external stimulus

4.03 × 10–4

9.41 × 10–2

1.39 (331, 54, 181, 41)

GO:0043207

response to external biotic stimulus

4.49 × 10–4

9.18 × 10–2

1.40 (331, 51, 181, 39)

GO:0009607

response to biotic stimulus

4.49 × 10–4

8.16 × 10–2

1.40 (331, 51, 181, 39)

GO:0051707

response to other organisms

4.49 × 10–4

7.34 × 10–2

1.40 (331, 51, 181, 39)

GO:0019731

antibacterial humoral response

7.21 × 10–4

1.07 × 10–1

1.71 (331, 16, 181, 15)

  1. aThe enrichment P value computed according to the mHG or HG model; this P value is not corrected for multiple testing of 1636 GO terms
  2. bThe correction of the above P value for multiple testing using the Benjamini and Hochberg method
  3. cDefined as follows: N is the total number of genes, B is the total number of genes associated with a specific GO term, n is the number of genes in the top of the user’s input list or in the target set when appropriate, b is the number of genes in the intersection; enrichment = (b/n)/(B/N)
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BMC Biology

ISSN: 1741-7007

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