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Fig. 7 | BMC Biology

Fig. 7

From: De novo assembly of the complex genome of Nippostrongylus brasiliensis using MinION long reads

Fig. 7

Classification of subgraphs and identification of a haplotype signature. a Bandage plots for the 28 simple GFA subgraphs made of three contigs. The box on the right is an enlarged view of a heterozygous branch subgraph with a total length of 451 kb. b Dot plots of LAST all-against-all minimum-distance sequence comparisons between the three constituent contigs, delineated by the gray lines, for representatives for each of the subgraph classes. The sum of the contig lengths is indicated. The 451-kb subgraph is that enlarged in (a). c Multiple alignment of contig sequences from this subgraph and corresponding region of the DNA reads that map to them, 300 bp either side of the defining deletion. The color code is as in Fig. 4. Graphical Fragment Assembly (GFA) (file format); describes the assembly graph, Very long stretch of a complex tandem repeat (VeCTR)

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