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Table 2 Data collection and refinement statistics

From: Enzyme intermediates captured “on the fly” by mix-and-inject serial crystallography

 

Reference

30 ms

100 ms

500 ms

2 s

(a) Shard-shaped crystals

 Hits

98,895

35,065

88,413

158,620

39,140

 Indexed images

73,170

24,397

79,328

134,583

32,201

 Resolution (Å)

2.45

2.75

2.15

2.20

2.30

 Space group

P21

P21

P21

P21

P21

 Unit cell (Å,o)

 (a, b, c, and β)

79.0 97.2

110.6 108.7

78.7 96.8

112.6 109.7

79.2 96.5

113.7 109.9

78.8 96.3

113.5 110.0

78.2 95.6

112.3109.9

 Volume (Å3)

804,442

807,597

817,098

809,346

789,415

 BlaC/unit cell

8

8

8

8

8

 Completeness

100(100)

100(100)

100(100)

100(100)

100(100)

 Multiplicity

1221 (103.3)

526 (142.0)

895 (58.8)

1363 (81.3)

330 (59.0)

 SNR

8.9(2.4)

6.4(0.9)

7.1(1.0)

8.3(0.9)

5.4(1.1)

 Rsplit (%)

9.8(209.4)

14.2(121.1)

11.18(111.0)

9.7(126.3)

11.9(104.1)

 CC-half (%)

99.4(41.1)

98.6(34.5)

99.4(37.5)

99.6(31.0)

96.8(35.4)

Refinement

 Rcryst/Rfree (%)

19.2/24.4

19.3/25.0

20.9/23.9

21.9/25.0

23.5/26.6

*BCEF/E-CFO*a

0/0

91 (23b)

57/32

40/36c

58/25

*DCEF/E-CFO*a

0/0

89 (24b)

54/40

38/44

51/31

 Stacking

no

yes

yes

yes

yes

 H2O

315

143

499

431

399

 Average B value (Å2)

48.2

51.7

42.3

37.3

36.2

 Protein amino acid residues in asym. unit

265 × 4

265 × 4

265 × 4

265 × 4

265 × 4

 Ligands

0

2 + 2 (stacking)

2 + 2 (stacking)

2 + 2 (stacking)

2 + 2 (stacking)

 RMSD bond lengths (Å)

0.008

0.010

0.008

0.008

0.008

 RMSD bond angles (degrees)

1.10

1.72

1.66

1.67

1.74

 PO4

4

2

2

2

2

(b) Needle-shaped crystals

 Hits

171,314

64,507

115,223

141,935

36,606

 Indexed images

111,466

34,590

87,580

87,058

23,278

 Resolution (Å)

1.8

1.9

1.8

1.9

2.05

 Space group

P21

P21

P21

P21

P21

 Unit cell (Å,o)

 (a, b, c, and β)

39.6 41.6

69.3 104.8

39.5 41.6

69.3 104.8

39.6 41.6

69.3 104.9

39.6 41.7

69.5 104.9

39.6 41.7

69.5 104.9

 Volume (Å3)

110,375

110,096

110,323

110,908

110,908

 Completeness (%)

100(100)

100(100)

100(100)

100(100)

100(100)

 Multiplicity

985 (54.5)

330 (26.8)

831 (89.0)

806 (36.5)

238 (27.3)

 Signal-to-noise ratio

9.6(1.2)

5.8(0.8)

9.6(1.6)

8.6(0.9)

5.1(1.1)

 Rsplit (%)

6.6(97.0)

12.2(136.3)

6.6(72.5)

8.8(129.1)

14.0(105.9)

 CC* (%)

99.9(75.0)

99.9(76.1)

99.9(84.3)

99.9(68.1)

99.8(74.8)

 CC-half (%)

99.7(39.1)

99.4(40.4)

99.7(55.1)

99.7(30.2)

99.13(38.8)

Refinement

 Rcryst/Rfree (%)

21.5/24.5

20.7/26.2

23.0/26.7

21.7/26.4

20.0/25.0

 Nd

na

9

9

6

5

 CEF/E-CFO*a

0/0

59/0

51/35

43/53

71/0

 Stacking

no

no

no

no

no

 H2O

167

203

154

104

175

 Average B value (Å2)

34.7

16.9

10.5

15.7

18.3

 Protein amino acid residues in asym. unit

265

265

265

265

265

 Ligands

0

1

1

1

1

 RMSD bond lengths (Å)

0.008

0.007

0.007

0.003

0.008

 RMSD bond angles (degrees)

1.06

1.57

1.74

1.49

1.57

  1. *Bfor subunit B
  2. *Dfor subunit D
  3. aoccupancy of full-length, intact CEF to covalently bound, open E-CFO*, which has lost R. Numbers are rough estimates and should represent only trends (the error is on the order of 25%, see note b)
  4. bomit maps show only CEF in the active site. If E-CFO*‘s occupancy is refined at the same time, values around 24% are obtained. We consider this the error of our occupancy refinement
  5. cAddition of OH instead of the double bond ∆
  6. dIf N does not extrapolate to 100% occupancy, a fraction of reference structure is present. This is ignored in the refinement
  7. na not applicable
  8. RMSD root mean square deviation