Transposable element insertions shape gene regulation and melanin production in a fungal pathogen of wheat

Table 1 List of genes significantly downregulated in Zmr1 mutants in both 3D1 and 3D7 backgrounds

Gene ID	Log₂ FC		Annotation
Gene ID	3D1	3D7	Annotation
*Zt09_11_00186*	− 9.92	− 8.93	1,3,8-trihydroxynaphthalene reductase ( *Thr1* )
Zt09_4_00395	− 5.35	− 6.48	Similar to cytochrome p450
Zt09_2_00626	− 3.66	− 1.61	Hypothetical protein
*Zt09_11_00184*	− 3.22	− 4.35	Polyketide synthase ( *Pks1* )
Zt09_2_00074	− 2.5	− 5.09	Predicted protein
*Zt09_3_00872*	− 2.2	− 1.76	Homolog of *Aspergillus* yellowish green ( *Ayg1* )
Zt09_4_00393	− 2.19	− 3.27	Hypothetical protein
Zt09_1_00117	− 2.15	− 4.14	Hypothetical protein
Zt09_4_00394	− 2.15	− 2.4	Salicylate hydroxylase
Zt09_3_00063	− 2.01	− 5.28	Glycoside hydrolase family 18 protein
*Zt09_11_00185*	− 1.76	− 1.94	*Zymoseptoria* melanin regulation 1 ( *Zmr1* )
Zt09_1_00074	− 1.76	− 3.82	Hypothetical protein
*Zt09_1_00268*	− 1.67	− 2.5	Scytalone dehydratase (*Scd1*)

ISSN: 1741-7007