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Fig. 4 | BMC Biology

Fig. 4

From: Stable predictive markers for Phytophthora sojae avirulence genes that impair infection of soybean uncovered by whole genome sequencing of 31 isolates

Fig. 4

Structural and nucleotide diversity at the Avr1c locus among 31 isolates of Phytophthora sojae reveal distinct haplotypes associated with virulence phenotypes. a Variants within the coding region of the Phytophthora sojae Avr1c gene. Yellow box represents the coding region of the gene and gray bars, 5′ and 3′ UTR. Asterisks (*) indicate approximate positions of the SNPs. Those SNPs are representative of a cluster of SNPs defining a haplotype. b Schematic graph of the position of the SNPs for each isolate, grouped by haplotypes. SNPs in gray background are different from the reference genome (isolate P6497). c Phenotypic response of reference genome strain (P6497) and the outliers (when the phenotype did not match the genotype based on the hypocotyl test) from the hydroponic assay. Responses showed here are representative of all isolates tested. All phenotypic responses of other tested isolates can be found in Additional file 3

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