Table 1 Summary of the hits obtained in the genome-wide association studies based on 173 strains from hpEurope-derived sub-populations based upon patient disease phenotype
From: A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk
| Â | Number of hits with p value | Number of genes with hits of p value | ||
|---|---|---|---|---|
GWAS experiment | ≤ 10−5 | ≤ 10− 6 | ≤ 10− 5 | ≤ 10− 6 |
Gastric cancer vs others (k-mer) | 166 | 39 | 20 | 6 |
Non-atrophic gastritis vs others (k-mer) | 44 | 15 | 10 | 2 |
Gastric cancer vs others (SNP) | 237 | 33 | 4 | 3 |
Non-atrophic gastritis vs others (SNP) | 195 | 31 | 4 | 2 |