Table 3 Summary of all curated knowledge available in RegulonDB that was obtained via HT methodologies

Methodologies

Number of articles

Number of TFs

Name of the TFs

 gSELEX

2, previous work

3

CRP, H-NS, and LeuO

19, this work

18

AscG, BasR, CitB, Cra, CsgD, Dan, DpiA, LeuO, Lrp, NemR, OmpR, PdhR, PgrR, RcdA, RstA, RutR, SdiA, and SutR

 ChIP-chip

1, previous work

1

PurR

17, this work

15

ArcA, ArgR, CRP, Fis, FNR, H-NS, IHF, LexA, Lrp, NsrR, RpoD (Sigma70), RpoH (Sigma32), RutR, Rho, and TrpR

 ChIP-exo

2, previous work

6

GadE, GadW, GadX, OxyR, SoxS, and SoxR

7, this work

4

ArgR, Fur, OmpR, and UvrY

 ChIP-seq

8, this work

8

CsiR, FNR, Fur, H-NS, Nac, OmpR, RpoD (Sigma70), and RpoS (Sigma38)

Methodologies

Number of articles

Number of TSSs

Dataset in RegulonDB

 TSS determination

2, previous work

5197

http://regulondb.ccg.unam.mx/menu/download/high_throughput_datasets/ [8]

1806

http://regulondb.ccg.unam.mx/menu/download/high_throughput_datasets/ [8]

1, previous work

14000

http://regulondb.ccg.unam.mx/menu/download/high_throughput_datasets/ [8]