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Table 4 Summary of curated HT-generated regulatory interactions. The total of new RIs is 1048 and those RIs already existing are 107

From: A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

Complete data uploaded in RegulonDB
  Datasets Regulatory interactions  
TF Total number of peaks Sites with missing information New Known (added in evidence) PMID HT methodology Reference
ArgR 122 37 67 18 25735747 ChIP-exo, qPCR, and microarray [28]
ArgR 48 34 10 4 22082910, this work ChIP-chip and microarray [29], this work
ArcA 278 143 115 20 24699140 ChIP-chip, qPCR, and microarray [30]
CsiR 126 0 126 0 28061857 ChIP-seq and RNA-seq [16]
FNR 224 186 29 9 24699140 ChIP-chip, qPCR, and microarray [30]
FNR 53 0 29 24 23818864 ChIP-seq and microarray [31]
Fur 144 87 39 18 25222563 ChIP-exo and RNA-seq [32]
Fur 134 119 12 3 26670385, this work ChIP-seq and microarray [33], this work
Lrp 143 67 68 8 19052235 ChIP-chip and microarray [34]
Nac 534 0 531 3 28061857 ChIP-seq and RNA-seq [16]
OmpR 41 31 10 0 26332955 gSELEX [35]
OmpR 41 30 11 0 28526842 ChIP-exo and RNA-seq [36]
TrpR 8 7 1 0 22082910, this work ChIP-chip and microarray [29], this work