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Table 5 Summary of interactions curated in datasets

From: A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0

TF interactions within datasets
TF Number of interactions PMID HT methodology Reference
ArcA 143 24699140 ChIP-chip [30]
ArgR 426 22082910 ChIP-chip [29]
ArgR 38 25735747 ChIP-exo [28]
AscG 9 19633077 gSELEX [37]
BasR 99 22442305 gSELEX [38]
CitB 15 18997424 gSELEX [39]
Cra 14 16115199 gSELEX [40]
Cra 234 21115656 gSELEX [41]
CRP 39 16301522 ChIP-chip [42]
CsgD 31 21421764 gSELEX [43]
CsiR 126 28061857 ChIP-seq [16]
Dan 176 20156994 gSELEX [44]
DpiA 15 18997424 gSELEX [39]
Fis 228 16963779 ChIP-chip [45]
FNR 137 17164287 ChIP-chip [46]
FNR 796 23818864 ChIP-seq and ChIp-chip [31]
FNR 186 24699140 ChIP-chip [30]
Fur 473 26670385 ChIP-seq [33]
Fur 91 25222563 ChIP-exo [32]
H-NS 1501 23818864 ChIP-chip [31]
H-NS 101 16963779 ChIP-chip [45]
H-NS 53 21097887 ChIP-seq [47]
IHF 1020 23818864 ChIP-chip [31]
IHF 155 16963779 ChIP-chip [45]
LeuO 17 19429622 gSELEX [48]
LexA 69 16264194 ChIP-chip [49]
Lrp 67 19052235 ChIP-chip [34]
Lrp 296 28348809 gSELEX [50]
Nac 537 28061857 ChIP-seq [16]
NemR 6 18567656 gSELEX [51]
NsrR 83 19656291 ChIP-chip [52]
OmpR 68 28061857 ChIP-seq [16]
OmpR 30 28526842 ChIP-exo [36]
OmpR 31 26332955 gSELEX [35]
PdhR 14 17513468 gSELEX [53]
PgrR 82 23301696 gSELEX [54]
RcdA 39 23233451 gSELEX [55]
RstA 34 17468243 gSELEX [56]
RutR 20 18515344 ChIP-chip [57]
RutR 9 17919280 gSELEX [58]
SdiA 212 24645791 gSELEX [59]
SutR 15 25406449 gSELEX [60]
TrpR 17 22082910 ChIP-chip [29]
UvrY 288 26673755 CHIP-exo [61]
Sigma factors and Rho interactions within datasets
Sigma factors and Rho Number of interactions PMID HT methodology Reference
RpoD (Sigma70) 1214 16109958 ChIP-chip [62]
RpoD (Sigma70) 528 16301522 ChIP-chip [42]
Rho 260 19706412 ChIP-chip [63]
RpoD (Sigma70) 6350 23818864 ChiP-seq [31]
RpoH (Sigma32) 82 16892065 ChIP-chip [64]
RpoH (Sigma32) 44 20602746 ChIP-chip [65]
RpoS (Sigma38) 91 26020590 ChiP-seq [66]