| |
Gencodea
|
Ensemblb
|
RefSeqc
|
CHESSd
|
|---|
|
Protein-coding genes
|
19,901
|
20,376
|
20,345
|
21,306
|
|
lncRNA genes
|
15,779
|
14,720
|
17,712
|
18,484
|
|
Antisense RNA
|
5501
| |
28
|
2694
|
|
Miscellaneous RNA
|
2213
|
2222
|
13,899
|
4347
|
|
Pseudogenes
|
14,723
|
1740
|
15,952
| |
|
Total transcripts
|
203,835
|
203,903
|
154,484
|
323,827
|
- Note that despite the many differences shown for Gencode and Ensembl, Gencode is created by merging the Havana manual annotation and the Ensembl automated annotation, and the releases coincide (https://www.gencodegenes.org/faq.html)
- aGencode statistics for version 28 from www.gencodegenes.org/stats/current.html as of July 12.2018
- bEnsemble statistics for version 92.38, which corresponds to Gencode v28, from ensembl.org/Homo_sapiens/Info/Annotation as of July 12, 2018
- cRefSeq statistics for release 108 from www.ncbi.nlm.nih.gov/genome/annotation_euk/Homo_sapiens/108/ as of July 12, 2018
- dCHESS statistics for version 2.0 from ccb.jhu.edu/chess as of July 12, 2018. CHESS does not currently include pseudogenes
