| Gencodea | Ensemblb | RefSeqc | CHESSd |
---|
Protein-coding genes | 19,901 | 20,376 | 20,345 | 21,306 |
lncRNA genes | 15,779 | 14,720 | 17,712 | 18,484 |
Antisense RNA | 5501 | Â | 28 | 2694 |
Miscellaneous RNA | 2213 | 2222 | 13,899 | 4347 |
Pseudogenes | 14,723 | 1740 | 15,952 | Â |
Total transcripts | 203,835 | 203,903 | 154,484 | 323,827 |
- Note that despite the many differences shown for Gencode and Ensembl, Gencode is created by merging the Havana manual annotation and the Ensembl automated annotation, and the releases coincide (https://www.gencodegenes.org/faq.html)
- aGencode statistics for version 28 from www.gencodegenes.org/stats/current.html as of July 12.2018
- bEnsemble statistics for version 92.38, which corresponds to Gencode v28, from ensembl.org/Homo_sapiens/Info/Annotation as of July 12, 2018
- cRefSeq statistics for release 108 from www.ncbi.nlm.nih.gov/genome/annotation_euk/Homo_sapiens/108/ as of July 12, 2018
- dCHESS statistics for version 2.0 from ccb.jhu.edu/chess as of July 12, 2018. CHESS does not currently include pseudogenes