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Fig. 3. | BMC Biology

Fig. 3.

From: Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions

Fig. 3.

Expression measures and possible covariates associated to the individual clusters in GM12878 cell line box plots of values of a logarithm of number of CAGE tags. This is the criterion that served to determine active and silent promoters. b FPKM of RNA-seq for the target genes of the promoters in the cluster. c CpG contents in promoter region. The dashed line is the cutoff for defining high/low CpG contents human promoter. d Height of DNase accessibility peak in the promoters for each cluster. Cluster identifiers given at the bottom of the figure refer to all parts of the figure

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BMC Biology

ISSN: 1741-7007

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