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Fig. 5 | BMC Biology

Fig. 5

From: Nuclear genome sequence of the plastid-lacking cryptomonad Goniomonas avonlea provides insights into the evolution of secondary plastids

Fig. 5

Phylogenomic analysis of the eukaryotic tree of life. Tree shown is a maximum likelihood (ML) phylogeny of a 250 marker gene/protein dataset as in Burki et al. [14] that includes new transcriptome data from Go. avonlea. The phylogeny is based on a concatenated marker gene alignment of 71,151 unambiguously aligned sites across 98 OTUs inferred under the model LG + C60 + F + PMSF with 100 standard bootstrap replicates. The tree shown is midpoint rooted. Black dots indicate maximal support for a particular node. When not maximal, only bootstrap support values > 70% are shown. The scale bar shows an inferred 0.2 substitutions per site

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