Assembly | Organism | Gene status | Prots | %Completeness | Total | Average | %Ortho |
|---|
Genome |
E. gracilis
| Complete | 22 | 8.87 | 37 | 1.68 | 54.55 |
| | Partial | 50 | 20.16 | 89 | 1.78 | 56 |
T. brucei
| Complete | 196 | 79.03 | 259 | 1.32 | 24.49 |
| | Partial | 205 | 82.66 | 282 | 1.38 | 28.29 |
L. major
| Complete | 194 | 78.23 | 220 | 1.13 | 11.34 |
| | Partial | 204 | 82.26 | 245 | 1.2 | 15.69 |
Transcriptome |
E. gracilis
| Complete | 187 | 75.4 | 390 | 2.09 | 65.78 |
| | Partial | 218 | 87.9 | 506 | 2.32 | 69.72 |
T. brucei
| Complete | 190 | 76.61 | 393 | 2.07 | 60 |
| | Partial | 205 | 82.66 | 448 | 2.19 | 63.41 |
L. major
| Complete | 133 | 53.63 | 275 | 2.07 | 64.66 |
| | Partial | 194 | 78.23 | 405 | 2.1 | 64.43 |
- Comparisons for CEGMA scores between E. gracilis, T. brucei and L. major as an estimate of ‘completeness’ based on 248 CEGs. Prots number of 248 ultra-conserved CEGs present in genome, %Completeness percentage of 248 ultra-conserved CEGs present, Total total number of CEGs present including putative orthologs, Average average number of orthologs per CEG, %Ortho percentage of detected CEGs that have more than 1 ortholog, Complete those predicted proteins in the set of 248 CEGs that when aligned to the HMM for the KOG for that protein family, give an alignment length that is 70% of the protein length. i.e. if CEGMA produces a 100 amino acid protein, and the alignment length to the HMM to which that protein should belong is 110, then we would say that the protein is “complete” (91% aligned), Partial those predicted proteins in the 248 sets that are incomplete, but still exceeds a pre-computed minimum alignment score. Keys are as described [58]
