Table 4 Assembly statistics for the transcriptome
From: Transcriptome, proteome and draft genome of Euglena gracilis
Transcripts | Â | Coding sequence (CDS) | Â | Proteins | Â |
|---|---|---|---|---|---|
Number of sequences | 72,509 | Number of sequences | 36,526 | Number of proteins | 36,526 |
Median sequence length | 540 | Median sequence length | 765 | Median protein length | 254 |
Mean sequence length | 869 | Mean sequence length | 1041 | Mean protein length | 346 |
Max sequence length | 25,763 | Max sequence length | 25,218 | Max protein length | 8406 |
Min sequence length | 202 | Min sequence length | 297 | Min protein length | 98 |
No. sequence > 1kbp | 19,765 | No. sequence > 1kbp | 13,991 | No. proteins > 1kaa | 1290 |
No. sequence > 10kbp | 25 | No. sequence > 10kbp | 24 | N50 | 471 |
No. sequence > 100kbp | 0 | N50 | 1413 |  |  |
No. gaps | 0 | Combined sequence length | 38,030,668 | Â | Â |
Bases in gaps | 0 | Â | Â | Â | Â |
N50 | 1242 | Â | Â | Â | Â |
Combined sequence length | 63,050,794 | Â | Â | Â | Â |