Table 3 Nematode-killing candidate genes
Hierarchical orthologous group (HOG) | Annotation | Number of copies | PFAM domain | |
|---|---|---|---|---|
JUb 129 | JUb 275 | |||
HOG04283 | Collagenase | 1 | 1 | PF01136 |
HOG04425 | Chitinase | 1 | 1 | – |
HOG04486 | Flavastacin precursor, Astacin | 1 | 1 | PF01400 |
HOG04350 | Pertussis toxin subunit S1 | 3 | 1 | – |
HOG04652 | Pertussis toxin subunit S1 | 1 | 1 | – |
HOG04395 | Thiol-activated cytolysin (pfo) | 1 | 1 | PF01289 |
HOG04296 | Thiol-activated cytolysin (slo1) | 1 | 1 | PF01289 |
HOG04279 | Thiol-activated cytolysin (slo2) | 1 | 1 | PF01289 |
HOG04278 | Thiol-activated cytolysin (slo3) | 1 | 1 | PF01289 |
HOG04277 | Thiol-activated cytolysin (slo4) | 1 | 1 | PF01289 |
HOG04276 | Thiol-activated cytolysin (slo5) | 1 | 1 | PF01289 |
HOG04275 | Thiol-activated cytolysin (slo6) | 1 | 1 | PF01289 |
HOG04372 | Thiol-activated cytolysin (slo7) | 1 | 1 | PF01289 |
HOG04375 | Thiol-activated cytolysin (slo8) | 1 | 1 | PF01289 |
HOG04370 | Cysteine protease, C1A familya | 2 | 2 | PF00112 |
HOG04523 | Retroviral aspartyl protease | 1 | 1 | PF00077 |
HOG04537 | Protease/peptidase | 1 | 1 | PF00664 |
HOG04274 | d-alanyl-d-alanine carboxypeptidase precursor | 1 | 1 | PF00144 |
HOG04378 | d-alanine carboxypeptidase | 1 | 1 | PF00144 |
HOG04589 | nlpD Murein hydrolase activator | 1 | 1 | PF01551 |
HOG04363 | CAAX amino terminal protease | 1 | 1 | PF02517 |
HOG04642 | ATP-dependent Clp protease | 1 | 1 | PF00004 |
HOG04407 | Hemolysin | 1 | 1 | PF12700 |
HOG04538 | Hemolysin | 1 | 1 | – |
24 × HOGs | Por geneb | 38 | 38 | PF00041; PF07593; PF11958; PF04231; PF01421;PF02128 |