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Table 3 Nematode-killing candidate genes

From: The golden death bacillus Chryseobacterium nematophagum is a novel matrix digesting pathogen of nematodes

Hierarchical orthologous group (HOG) Annotation Number of copies PFAM domain
JUb 129 JUb 275
HOG04283 Collagenase 1 1 PF01136
HOG04425 Chitinase 1 1
HOG04486 Flavastacin precursor, Astacin 1 1 PF01400
HOG04350 Pertussis toxin subunit S1 3 1
HOG04652 Pertussis toxin subunit S1 1 1
HOG04395 Thiol-activated cytolysin (pfo) 1 1 PF01289
HOG04296 Thiol-activated cytolysin (slo1) 1 1 PF01289
HOG04279 Thiol-activated cytolysin (slo2) 1 1 PF01289
HOG04278 Thiol-activated cytolysin (slo3) 1 1 PF01289
HOG04277 Thiol-activated cytolysin (slo4) 1 1 PF01289
HOG04276 Thiol-activated cytolysin (slo5) 1 1 PF01289
HOG04275 Thiol-activated cytolysin (slo6) 1 1 PF01289
HOG04372 Thiol-activated cytolysin (slo7) 1 1 PF01289
HOG04375 Thiol-activated cytolysin (slo8) 1 1 PF01289
HOG04370 Cysteine protease, C1A familya 2 2 PF00112
HOG04523 Retroviral aspartyl protease 1 1 PF00077
HOG04537 Protease/peptidase 1 1 PF00664
HOG04274 d-alanyl-d-alanine carboxypeptidase precursor 1 1 PF00144
HOG04378 d-alanine carboxypeptidase 1 1 PF00144
HOG04589 nlpD Murein hydrolase activator 1 1 PF01551
HOG04363 CAAX amino terminal protease 1 1 PF02517
HOG04642 ATP-dependent Clp protease 1 1 PF00004
HOG04407 Hemolysin 1 1 PF12700
HOG04538 Hemolysin 1 1
24 × HOGs Por geneb 38 38 PF00041; PF07593; PF11958; PF04231; PF01421;PF02128
  1. aSingle copy present in C. shigense genome
  2. bAlso present in other Chryseobacterium spp. genomes: C. contaminans (n = 8), C. gallinarum (n = 7), C. indologenes (n = 6), C. indoltheticum (n = 4) and C. shigense (n = 6)