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Table 2 Low-confidence imprinted genes identified in either LCLs or whole blood

From: RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting

  Gene name Chr Start (hg19) End (hg19) Cytogenetic band Strand Pat ratio (LCLS/LCLU/WB) Preferentially expressed allele Confidence (LCL/WB)
1 NEK10 3 27151576 27410951 p24.1 0.48/0.48/0.18 Maternal −/LC
2 EHHADH 3 184908412 184999778 q27.2 0.58/0.58/0.88 Paternal −/LC
3 IGF2BP3 7 23349828 23510086 p15.3 0.54/0.54/1.00 Paternal LC/−
4 RPS2P32 7 23530092 23530983 p15.3 + 0.88/0.79/0.64 Paternal LC/−
5 PEG13 8 141104993 141110634 q24.3 0.47/0.47/0.99 Paternal −/LC
6 IGF2 11 2150342 2170833 p15.5 NA/ NA/0.89 Paternal −/LC
7 (unannotated transcript) 13 60794418 60853802 q21.2 + NA/0.86/NA Paternal LC/−
8 RP11-64J4.2 17 3182069 3289633 p13.3 0.27/0.30/0.49 Maternal LC/−
9 CHRNE 17 4801069 4806369 p13.2 0.56/0.59/0.70 Paternal −/LC
  1. Low-confidence imprinted genes were classified as those transcripts showing significant evidence of parental expression bias (at 10% FDR) by just one statistical test in one of the two cohort studied. LCLs and LCLu indicate the results from LCL stranded and unstranded data, respectively. For genes with multiple UGFs (Additional file 3), we report paternal ratios for the UGF with the most significant p value
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