Table 2 Low-confidence imprinted genes identified in either LCLs or whole blood
From: RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting
| Â | Gene name | Chr | Start (hg19) | End (hg19) | Cytogenetic band | Strand | Pat ratio (LCLS/LCLU/WB) | Preferentially expressed allele | Confidence (LCL/WB) |
|---|---|---|---|---|---|---|---|---|---|
1 | NEK10 | 3 | 27151576 | 27410951 | p24.1 | – | 0.48/0.48/0.18 | Maternal | −/LC |
2 | EHHADH | 3 | 184908412 | 184999778 | q27.2 | – | 0.58/0.58/0.88 | Paternal | −/LC |
3 | IGF2BP3 | 7 | 23349828 | 23510086 | p15.3 | – | 0.54/0.54/1.00 | Paternal | LC/− |
4 | RPS2P32 | 7 | 23530092 | 23530983 | p15.3 | + | 0.88/0.79/0.64 | Paternal | LC/− |
5 | PEG13 | 8 | 141104993 | 141110634 | q24.3 | – | 0.47/0.47/0.99 | Paternal | −/LC |
6 | IGF2 | 11 | 2150342 | 2170833 | p15.5 | – | NA/ NA/0.89 | Paternal | −/LC |
7 | (unannotated transcript) | 13 | 60794418 | 60853802 | q21.2 | + | NA/0.86/NA | Paternal | LC/− |
8 | RP11-64J4.2 | 17 | 3182069 | 3289633 | p13.3 | – | 0.27/0.30/0.49 | Maternal | LC/− |
9 | CHRNE | 17 | 4801069 | 4806369 | p13.2 | – | 0.56/0.59/0.70 | Paternal | −/LC |