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Fig. 5 | BMC Biology

Fig. 5

From: MARPLE, a point-of-care, strain-level disease diagnostics and surveillance tool for complex fungal pathogens

Fig. 5

Gene sequencing on the MinION platform can be used to accurately genotype Pst isolates and define specific race groups. All Ethiopian Pst isolates collected from 2016 onwards cluster in a single monophyletic group (orange diamonds). The 13 representatives of previously defined race groups (numbered squares) tended to cluster in the phylogeny with Pst isolates of a similar genetic background. Phylogenetic analysis was carried out using a maximum-likelihood model and 100 bootstraps. Scale indicates the mean number of nucleotide substitutions per site. Bootstrap values are provided in Additional file 10

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