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Fig. 4 | BMC Biology

Fig. 4

From: Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars

Fig. 4

Expansion of gene clusters, enzymatic reactions, and metabolic pathways. a Associations of protein groups using OrthoMCL clustering, b predicted metabolic reactions, and c metabolic pathways present in the cassava 60444, TME3, and AM560 genomes and in the genome of their close relative Ricinus communis as well as the Arabidopsis thaliana genome as outgroup. Numbers in the Venn diagram sections correspond to the number of cluster groups. The first number below the cultivar name denotes the total number of transcripts for proteins that were included in the OrthoMCL analysis. The second number indicates the number of transcripts from the genes for the proteins contained in the protein clusters. The heatmaps show the Jaccard coefficient between two species (intersection divided by the union of their proteins, reactions, or pathways)

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