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Table 1 Assembly statistics for the cassava TME3 and 60444 genomes compared with previously published assemblies of cassava genomes

From: Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars

Cultivar

TME3

60444

KU50 [20]

AM560 [19]

Number contigs

12,971

11,459

99,509

39,574

Contig N50 (kb)

97.58

116.8

5.28

27.87

Total contig length (Mb)

947

975

NA

NA

Total primary contig length (Mb)

732

713

 

Total haplotig length (Mb)

213

260

 

Optical map supported scaffolds

558

552

NA

NA

Primary scaffolds

506

491

 

Optical Hybrid-scaffold N50 (Mb)

2.25

2.35

NA

NA

Hi-C scaffolding N50 (Mb)

53.35

59.19

NA

NA

Assembly size (Mb)

1225

1277

291.1*

582.3

TE proportion (%)

64.81

64.91

25.7

50.3

Annotated protein-coding genes

33,853

34,127

38,845

33,033

  1. *The KU50 genome was reported to be 495 Mb in [20]; the number shown here was the published and downloadable DNA sequence available in 2014