Cultivar | TME3 | 60444 | KU50 [20] | AM560 [19] |
---|---|---|---|---|
Number contigs | 12,971 | 11,459 | 99,509 | 39,574 |
Contig N50 (kb) | 97.58 | 116.8 | 5.28 | 27.87 |
Total contig length (Mb) | 947 | 975 | NA | NA |
Total primary contig length (Mb) | 732 | 713 | Â | |
Total haplotig length (Mb) | 213 | 260 | Â | |
Optical map supported scaffolds | 558 | 552 | NA | NA |
Primary scaffolds | 506 | 491 | Â | |
Optical Hybrid-scaffold N50 (Mb) | 2.25 | 2.35 | NA | NA |
Hi-C scaffolding N50 (Mb) | 53.35 | 59.19 | NA | NA |
Assembly size (Mb) | 1225 | 1277 | 291.1* | 582.3 |
TE proportion (%) | 64.81 | 64.91 | 25.7 | 50.3 |
Annotated protein-coding genes | 33,853 | 34,127 | 38,845 | 33,033 |