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Table 1 Assembly statistics for the cassava TME3 and 60444 genomes compared with previously published assemblies of cassava genomes

From: Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars

Cultivar TME3 60444 KU50 [20] AM560 [19]
Number contigs 12,971 11,459 99,509 39,574
Contig N50 (kb) 97.58 116.8 5.28 27.87
Total contig length (Mb) 947 975 NA NA
Total primary contig length (Mb) 732 713  
Total haplotig length (Mb) 213 260  
Optical map supported scaffolds 558 552 NA NA
Primary scaffolds 506 491  
Optical Hybrid-scaffold N50 (Mb) 2.25 2.35 NA NA
Hi-C scaffolding N50 (Mb) 53.35 59.19 NA NA
Assembly size (Mb) 1225 1277 291.1* 582.3
TE proportion (%) 64.81 64.91 25.7 50.3
Annotated protein-coding genes 33,853 34,127 38,845 33,033
  1. *The KU50 genome was reported to be 495 Mb in [20]; the number shown here was the published and downloadable DNA sequence available in 2014
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