Skip to main content

Table 2 Physical map and Linkage map assignment. Haplotag markers from the consensus map of Latta et al. [36] where used to assign scaffold assemblies to linkage groups. Two scaffolds mapped to LG 2 and were merged

From: Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species

LG

Total markers

Miss-matches

% Miss-matches

% Matches

A. atlantica Hi-C scaffold

A. atlantica chromosome

1

705

12

1.7%

98.3%

ScoFOjO_1702_2338

AA2

2A1

85

2

2.4%

97.6%

ScoFOjO_1577

AA5

2B1

378

10

2.6%

97.4%

ScoFOjO_1310

3

546

11

2.0%

98.0%

ScoFOjO_2069_2732

AA3

4

370

16

4.3%

95.7%

ScoFOjO_2050_2712

AA6

5

872

24

2.8%

97.2%

ScoFOjO_350_483

AA4

6

749

36

4.8%

95.2%

ScoFOjO_1760_2399

AA7

7

846

8

0.9%

99.1%

ScoFOjO_324_449

AA1

Total:

4551

119

2.7%

97.3%

–

–

  1. 1A = Markers spans 205.8 on the physical map corresponding to linkage positions 0–48 cM on the consensus linkage map; B = Markers spans 278.2 Mb on the physical map corresponding to linkage position 49–116 cM on the consensus linkage map