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Table 2 Physical map and Linkage map assignment. Haplotag markers from the consensus map of Latta et al. [36] where used to assign scaffold assemblies to linkage groups. Two scaffolds mapped to LG 2 and were merged

From: Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species

LGTotal markersMiss-matches% Miss-matches% MatchesA. atlantica Hi-C scaffoldA. atlantica chromosome
1705121.7%98.3%ScoFOjO_1702_2338AA2
2A18522.4%97.6%ScoFOjO_1577AA5
2B1378102.6%97.4%ScoFOjO_1310
3546112.0%98.0%ScoFOjO_2069_2732AA3
4370164.3%95.7%ScoFOjO_2050_2712AA6
5872242.8%97.2%ScoFOjO_350_483AA4
6749364.8%95.2%ScoFOjO_1760_2399AA7
784680.9%99.1%ScoFOjO_324_449AA1
Total:45511192.7%97.3%
  1. 1A = Markers spans 205.8 on the physical map corresponding to linkage positions 0–48 cM on the consensus linkage map; B = Markers spans 278.2 Mb on the physical map corresponding to linkage position 49–116 cM on the consensus linkage map