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Table 1 Summary statistics of the 20 input and new improved Anopheles assemblies

From: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Species Input assemblies Approaches applied New assemblies
Assembly version Number of scaffolds Scaffold N50 (Kbp) Assembly version Number of scaffolds [% reduced] Scaffold N50 (Kbp) [fold increase]
A. albimanus AalbS1 204 18,068 SYN + AGO + PHY AalbS3§ 203 [0.0] 33,601 [3.5]
A. arabiensis AaraD1 1214 5604 SYN + AGO + ALN AaraD2 1124 [7.5] 47,566 [8.5]
A. atroparvus AatrE1 1371 9207 SYN + AGO + PHY AatrE4§ 1297 [5.4] 37,151 [4.0]
A. christyi AchrA1 30,369 9 SYN AchrA2 28,853 [5.0] 10 [1.1]
A. coluzzii AcolM1 10,521 4437 SYN AcolM2 10,440 [0.8] 4778 [1.1]
A. culicifacies AculA1 16,162 22 SYN AculA2 14,593 [9.7] 29 [1.3]
A. darlingi AdarC3 2221 115 SYN AdarC4 1838 [17.2] 159 [1.4]
A. dirus AdirW1 1266 6906 SYN + AGO AdirW2 1211 [4.3] 12,741 [1.8]
A. epiroticus AepiE1 2673 367 SYN + AGO AepiE2 2254 [15.7] 814 [2.2]
A. farauti AfarF1 550 1197 SYN + AGO AfarF3§ 299 [45.6] 15,480 [12.9]
A. funestus AfunF1 1392 672 SYN + AGO + PHY + PB AfunF2 1091 [21.6] 2051 [3.1]
A. maculatus AmacM1 47,797 4 SYN AmacM2 46,342 [3.0] 4 [1.0]
A. melas AmelC1 20,281 18 SYN AmelC3§ 18,604 [8.0] 21 [1.2]
A. merus AmerM1 2753 342 SYN + AGO AmerM3§ 1976 [28.2] 1896 [5.5]
A. minimus AminM1 678 10,313 SYN + AGO AminM2 652 [3.8] 15,145 [1.5]
A. quadriannulatus AquaS1 2823 1641 SYN + AGO AquaS2 2617 [7.3] 2675 [1.6]
A. sinensis AsinS2 10,448 579 SYN + AGO AsinS3 10,136 [3.0] 638 [1.1]
A. sinensis (Chinese) AsinC2 9592 814 SYN + PHY AsinC3 9482 [1.1] 1025 [1.3]
A. stephensi AsteS1 1110 837 SYN + AGO + PHY AsteS2 873 [21.4] 1780 [2.1]
A. stephensi (Indian) AsteI2 23,371 1591 SYN + AGO + PHY AsteI3 23,051[1.4] 3775 [2.4]
  1. §New assemblies built from adjacencies of input assembly versions via reconciliation with updated assembly versions: physical mapping improvements for AalbS2, AatrE2, and AatrE3; additional ‘Fosill’-based scaffolding for AfarF2 and AmerM2; and haplotype removal for AmelC2