Table 1 Summary statistics of the 20 input and new improved Anopheles assemblies
From: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies
Species | Input assemblies | Approaches applied | New assemblies | ||||
|---|---|---|---|---|---|---|---|
Assembly version | Number of scaffolds | Scaffold N50 (Kbp) | Assembly version | Number of scaffolds [% reduced] | Scaffold N50 (Kbp) [fold increase] | ||
A. albimanus | AalbS1 | 204 | 18,068 | SYN + AGO + PHY | AalbS3§ | 203 [0.0] | 33,601 [3.5] |
A. arabiensis | AaraD1 | 1214 | 5604 | SYN + AGO + ALN | AaraD2 | 1124 [7.5] | 47,566 [8.5] |
A. atroparvus | AatrE1 | 1371 | 9207 | SYN + AGO + PHY | AatrE4§ | 1297 [5.4] | 37,151 [4.0] |
A. christyi | AchrA1 | 30,369 | 9 | SYN | AchrA2 | 28,853 [5.0] | 10 [1.1] |
A. coluzzii | AcolM1 | 10,521 | 4437 | SYN | AcolM2 | 10,440 [0.8] | 4778 [1.1] |
A. culicifacies | AculA1 | 16,162 | 22 | SYN | AculA2 | 14,593 [9.7] | 29 [1.3] |
A. darlingi | AdarC3 | 2221 | 115 | SYN | AdarC4 | 1838 [17.2] | 159 [1.4] |
A. dirus | AdirW1 | 1266 | 6906 | SYN + AGO | AdirW2 | 1211 [4.3] | 12,741 [1.8] |
A. epiroticus | AepiE1 | 2673 | 367 | SYN + AGO | AepiE2 | 2254 [15.7] | 814 [2.2] |
A. farauti | AfarF1 | 550 | 1197 | SYN + AGO | AfarF3§ | 299 [45.6] | 15,480 [12.9] |
A. funestus | AfunF1 | 1392 | 672 | SYN + AGO + PHY + PB | AfunF2 | 1091 [21.6] | 2051 [3.1] |
A. maculatus | AmacM1 | 47,797 | 4 | SYN | AmacM2 | 46,342 [3.0] | 4 [1.0] |
A. melas | AmelC1 | 20,281 | 18 | SYN | AmelC3§ | 18,604 [8.0] | 21 [1.2] |
A. merus | AmerM1 | 2753 | 342 | SYN + AGO | AmerM3§ | 1976 [28.2] | 1896 [5.5] |
A. minimus | AminM1 | 678 | 10,313 | SYN + AGO | AminM2 | 652 [3.8] | 15,145 [1.5] |
A. quadriannulatus | AquaS1 | 2823 | 1641 | SYN + AGO | AquaS2 | 2617 [7.3] | 2675 [1.6] |
A. sinensis | AsinS2 | 10,448 | 579 | SYN + AGO | AsinS3 | 10,136 [3.0] | 638 [1.1] |
A. sinensis (Chinese) | AsinC2 | 9592 | 814 | SYN + PHY | AsinC3 | 9482 [1.1] | 1025 [1.3] |
A. stephensi | AsteS1 | 1110 | 837 | SYN + AGO + PHY | AsteS2 | 873 [21.4] | 1780 [2.1] |
A. stephensi (Indian) | AsteI2 | 23,371 | 1591 | SYN + AGO + PHY | AsteI3 | 23,051[1.4] | 3775 [2.4] |