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Table 3 Adaptive immunity

From: The round goby genome provides insights into mechanisms that may facilitate biological invasions

Gene

NEME annotation

Contig annotation

Start

End

Strand

CIITA

NEME_493

Contig_2585

3,985,719

3,993,128

Antisense

AICDA

NEME_58

Contig_447

597,424

599,014

Sense

AIRE

NEME_9

Contig_79

14,106,230

14,113,573

Antisense

B2M

NEME_421

Contig_2242

363,050

363,352

Antisense

B2M_pseudo

NEME_421

Contig_2242

368,352

368,721

Antisense

CD4

NEME_213

Contig_1334

340,445

348,248

Sense

CD74

NEME_71

Contig_593

791,743

796,652

Antisense

CD8a

NEME_729

Contig_3231

634,222

648,487

Antisense

CD8b

NEME_729

Contig_3231

656,030

660,462

Antisense

RAG1

NEME_106

Contig_787

4,690,414

4,695,142

Sense

RAG2

NEME_106

Contig_787

4,699,042

4,700,651

Antisense

TAP1

NEME_582

Contig_2864

694,776

722,339

Sense

TAP2

NEME_387

Contig_2107

2,987,106

2,993,287

Antisense

TAP2T

NEME_299

Contig_1786

3,697,645

3,704,089

Sense

Tapasin

NEME_387

Contig_2107

3,111,989

3,119,308

Sense

  1. Overview of manually annotated key adaptive immune genes