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Table 4 NLR-C characteristics

From: The round goby genome provides insights into mechanisms that may facilitate biological invasions

Group

Identified in this study

Walker A

Last residues of the largest exon

PYD?

B30.2?

1

 

GIAGVGKT

L(I/M)PVVKNT(T/R)RA

+

+

2

 

GVAGIGKS

LSAVIKTSKRA

+

+

3

 

GIAGIGKT

L(IP/TA)AV(R/S)NC(RK/TR/RR)A

+

4

 

GVAGIGKT

LPV(I/V)xxxx(A/V)x

5

x

GVAG(V/I)GKT

(L/M)PV(V/I)KASxK(A/V)

+

+

6

x

GVAGVGKT

L(I/V)P(A/V)VRNCRKA

  1. Key features of each of the six NLR-C subgroups as identified from zebrafish (Danio rerio) and round goby. Each of the groups is characterized by the presence of a highly conserved Walker A Motif and either the presence or absence of specific C- and N-terminal domains (PYD and B30.2). x denotes a variable amino acid, + and − denote whether the denoted domains are characteristically present/absent in the group