Skip to main content

Table 1 Quantitative and qualitative expression changes in the movant strains

From: Macromolecular crowding links ribosomal protein gene dosage to growth rate in Vibrio cholerae

  -35 -510 -1120 C2+479
Number of upregulated genes 2 (1) 62 (37) 361 (64) 439 (88)
Mean upregulationa n/d 1.5 ± 0.97 0.67 ± 0.41 0.78 ± 0.56
Number of downregulated genes 6 (4) 49 (2) 301 (9) 303 (17)
Mean downregulationa n/d − 0.5 ± 0.24 − 0.49 ± 0.26 − 0.52 ± 0.29
Total number of altered genes 8 111 (39) 662 (72) 742 (105)
Altered functions E, P, V E, O, R, V, N E, O, R, V, N, F, P, U
  1. The number of differentially expressed genes (p < 0.05) compared to parental strain in fast-growing conditions. The number in parenthesis represents genes whose expression varies more than 2-fold. The magnitude of expression change is quantified as the average of the Log2(FC) ± standard deviation
  2. aAverage of the Log2(FC) ± standard deviation. n/d not determined