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Table 1 Genes on W chromosome scaffolds 148 and 211 with non-preserved synteny relative to the homologous region on the Z chromosome. Orthologs were searched with BLASTP using an e value threshold of 1 × 10−3 and 75% minimum sequence identity

From: Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion

Scaffold

Gene

Product

Scaffold of the best ortholog (location in P. trichocarpa)

211

ADT2

Arogenate dehydratase/prephenate dehydratase 2, chloroplastic

100 (Chr08)

211

30220

Hypothetical protein

 

211

30217

Hypothetical protein

 

211

POPTR_0012s05040g

l-Ala-d/l-amino acid epimerase

 

211

30210

Hypothetical protein

71 (Chr18)

211

FBA

Fructose-bisphosphate aldolase

402* (Chr15)

148

KP1_5

Kinesin KP1

150 (Chr15)

148

ESP3_4

Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1

127 (Chr15)

148

CDC48MEE29

Cell division cycle protein 48 homolog

47 (Chr12)

148

ESP3_2

Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1

 

148

ESP3_6

Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1

127 (Chr15)

148

ARR5_2

Two-component response regulator ARR5

25 (Chr15)

148

ARR17

Two-component response regulator ARR17

 

148

WOX1_4

WUSCHEL-related homeobox 1

150 (Chr15)

148

ATM_6

Serine/threonine-protein kinase ATM

25 (Chr15)

148

BADH4_2

Betaine aldehyde dehydrogenase, chloroplastic

326 (Chr12)

148

ZDS_7

Zeta-carotene desaturase, chloroplastic/chromoplastic

593 (Chr15)

148

At4g28100

Uncharacterized GPI-anchored protein

12 (Chr12)

148

27648

Hypothetical protein

 

148

CDKE-1_12

Cyclin-dependent kinase E-1

4 (Chr01)

148

27660

Hypothetical protein

 
  1. *Scaffold 402 was inferred as an allelic variation of scaffold 150