Skip to main content

Table 1 Data collection and refinement statistics

From: Defining rules governing recognition and Fc-mediated effector functions to the HIV-1 co-receptor binding site

 

Fab N12-i2-gp12093TH057-M48U1 (data set 1)

Fab N12-i2-gp12093TH057-M48U1 (data set 2)

Data collection

 Wavelength, Ǻ

0.9795

0.9795

 Space group

P212121

P212121

 Cell parameters

a, b, c, Ă…

52.7, 69.5, 213.5

52.7, 69.5, 213.5

α, β, γ, °

90, 90, 90

90, 90, 90

  Molecules/a.u.

4

4

  Resolution, (Ă…)

50–3.2 (3.26–3.2)

50–3.2 (3.26–3.25)

 # of reflections

  Total

52,155

60,052

  Unique

12,129

12,777

Rmerga, %

32.1 (52.1)

29.5 (100)

Rpimb, %

15.6 (43.4)

14.8 (57.7)

  CC1/2c

0.931 (0.611)

0.96 (0.466)

I/σ

6.2 (1.1)

7.0 (1.25)

  Completeness, %

88.5 (66.9)

96.9 (97.7)

  Redundancy

4.3 (1.9)

4.7 (4.6)

Refinement statistics

 Resolution, Ă…

50.0–3.2

50.0–3.25

Rd, %

24.1

23.6

Rfreee, %

30.1

28.3

 # of atoms

  

  Protein

6130

6130

  Ligand

190

190

 Overall B value (Ă…)2

  Protein

81

80

  Ligand

74

71

 Root mean square deviation

  Bond lengths, Ă…

0.003

0.004

  Bond angles, °

0.7

0.8

 Ramachandranf

  

  Favored, %

90.1

90.2

  Allowed, %

98.5

98.3

  Outliers, %

1.5

1.7

PDB ID

6W4M

–

  1. Values in parentheses are for highest-resolution shell
  2. aRmerge = ∑│I− < I > │/∑I, where I is the observed intensity and < I > is the average intensity obtained from multiple observations of symmetry-related reflections after rejections
  3. bRpim = as defined by Weiss [39]
  4. cCC1/2 = as defined by Karplus and Diederichs [40]
  5. dR = ∑║Fo│ − │ Fc║/∑│Fo │, where Fo and Fc are the observed and calculated structure factors, respectively
  6. eRfree = defined by BrĂ¼nger [41]
  7. fCalculated with MolProbity