|
Assembly
|
Version 3.1
|
|
Contigs
|
|
Total assembly size
|
282,671,353
|
|
Number of contigs
|
17,162
|
|
Contig N50 length (bp)
|
74,750
|
|
Longest contig (bp)
|
718,286
|
|
Shortest contig (bp)
|
83
|
|
Number of contigs > 10 kb
|
4914
|
|
Mean (median) contig size, in bp
|
16,107 (1635)
|
|
Scaffolds
|
|
Number of scaffolds
|
10,492
|
|
Longest scaffold (bp)
|
2,080,308
|
|
Shortest scaffold (bp)
|
141
|
|
Number of scaffolds > 1 Mb
|
19
|
|
Mean (median) scaffold size, in bp
|
26,942 (1077)
|
|
N50 scaffold length (bb)
|
341,590
|
|
Genomic features (OGS 3.2)
|
|
Mean transcripts length (bp)
|
4653
|
|
Mean CDS length (bp)
|
1053
|
|
Mean exon length (bp)
|
244
|
|
Mean exon number per gene
|
5.4
|
|
Gene count
|
25,825
|
|
BUSCO analysis (genome v3.1)
|
|
Complete BUSCO
|
1563/1658 (94.2%)
|
|
Complete and single-copy BUSCOs
|
1531/1658 (92.3%)
|
|
Complete and duplicated BUSCOs
|
32/1658 (1.9%)
|
|
Fragmented BUSCOs
|
26/1658 (1.6%)
|
|
Missing BUSCOs
|
69/1658 (4.2%)
|
