Table 1 Assembly parameters and genome features of the grape phylloxera genome, version V3.1
Parameters | Numbers |
|---|---|
Assembly | Version 3.1 |
Contigs | |
 Total assembly size | 282,671,353 |
 Number of contigs | 17,162 |
 Contig N50 length (bp) | 74,750 |
 Longest contig (bp) | 718,286 |
 Shortest contig (bp) | 83 |
 Number of contigs > 10 kb | 4914 |
 Mean (median) contig size, in bp | 16,107 (1635) |
Scaffolds | |
 Number of scaffolds | 10,492 |
 Longest scaffold (bp) | 2,080,308 |
 Shortest scaffold (bp) | 141 |
 Number of scaffolds > 1 Mb | 19 |
 Mean (median) scaffold size, in bp | 26,942 (1077) |
 N50 scaffold length (bb) | 341,590 |
Genomic features (OGS 3.2) | |
 Mean transcripts length (bp) | 4653 |
 Mean CDS length (bp) | 1053 |
 Mean exon length (bp) | 244 |
 Mean exon number per gene | 5.4 |
 Gene count | 25,825 |
BUSCO analysis (genome v3.1) | |
 Complete BUSCO | 1563/1658 (94.2%) |
 Complete and single-copy BUSCOs | 1531/1658 (92.3%) |
 Complete and duplicated BUSCOs | 32/1658 (1.9%) |
 Fragmented BUSCOs | 26/1658 (1.6%) |
 Missing BUSCOs | 69/1658 (4.2%) |