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Table 1 Genome metrics of Frankliniella occidentalis

From: Genome-enabled insights into the biology of thrips as crop pests

Feature

Metric

Assembly size

415.8 Mb (263.8 Mb, contigs only)

Genome coverage

158.7×

Number of contigs

76,021

Contig N50

6.2 kb

Number of scaffolds

6263

Scaffold N50

948.9 kb

GC content

50.9%

aRepeat content

9.86%

bBUSCO scores

C:99.0%, S:97.6%, D:1.4%, F:0.5%, M:0.6%, n:1066

OGS v.1 (# curated)

16,859 genes (1694); 16,902 mRNAs (1738)

  1. aRepeat content retrieved from Petersen et al. [30]
  2. bBUSCO = Benchmarking Universal Single-Copy Orthologs (Arthropoda gene set = 1066 single-copy genes present in at least 90% of selected representative arthropods); performed on the genome assembly, orthologs classified as complete (C), single (S), duplicate (D), fragmented (F), or missing (M)
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BMC Biology

ISSN: 1741-7007

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