Table 1 Statistics of the A. gibbosum genome assembly and those of some available dinoflagellate genome assemblies
From: Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate
| Â | Â | Amphidinium gibbosum | Breviolum minutum (B1) [4] | Symbiodinium tridacnidorum (A3) [9] | Cladocopium sp. (C) [9] | P. glacialis CCMP1383 [6] | P. glacialis CCMP2088 [6] |
|---|---|---|---|---|---|---|---|
| Â | Total assembly length (bp) | 7,034,147,423 | 615,520,517 | 766,659,703 | 704,779,698 | 2,984,680,192 | 2,756,104,381 |
| Â | N50 of scaffold (bp) | 166.4k | 126.2k | 133.4k | 248.9k | 170.3k | 129.2k |
| Â | G+C content (%) | 47.1 | 43.6 | 49.9 | 43.0 | 45.9 | 46.2 |
Genes | No. of genes | 85,139 | 41,925 | 69,018 | 65,832 | 58,232 | 51,713 |
Average length of genes (bp) | 26,201 | 11,959 | 8834 | 8192 | 16,206 | 13,931 | |
Average length of transcripts (nt) | 1423 | 2067 | 1423 | 1479 | 1230 | 1178 | |
Gene models supported by EST (%) | 85.2 | 77.2 | 67.5 | 62.5 | 94.0 | 94.3 | |
Exons | No. of exons per gene | 8.1 | 19.6 | 13.38 | 11.3 | 11.6 | 10.8 |
Average length (bp) | 185 | 99.8 | 105 | 130 | 105.7 | 108.7 | |
Total length (Mb) | 126 | 82.1 | 98.2 | 97.3 | 71.6 | 60.9 | |
Introns | No. of genes with introns (%) | 93.7 | 95.3 | 83.4 | 80.3 | 73.8 | 75.6 |
Average length (bp) | 3468 | 499 | 561 | 622 | 1408.0 | 1296.0 | |
First two nucleotides at 5′ splice sites | GT/GC/GA | GT/GC/GA | GT/GC/GA | GT/GC/GA | GT/GC/GA | GT/GC/GA | |
Total length (Mb) | 1715 | 331.5 | 481.8 | 421.2 | 838.0 | 636.2 |