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Table 1 Statistics of the A. gibbosum genome assembly and those of some available dinoflagellate genome assemblies

From: Integrated omics unveil the secondary metabolic landscape of a basal dinoflagellate

   Amphidinium gibbosum Breviolum minutum (B1) [4] Symbiodinium tridacnidorum (A3) [9] Cladocopium sp. (C) [9] P. glacialis CCMP1383 [6] P. glacialis CCMP2088 [6]
  Total assembly length (bp) 7,034,147,423 615,520,517 766,659,703 704,779,698 2,984,680,192 2,756,104,381
  N50 of scaffold (bp) 166.4k 126.2k 133.4k 248.9k 170.3k 129.2k
  G+C content (%) 47.1 43.6 49.9 43.0 45.9 46.2
Genes No. of genes 85,139 41,925 69,018 65,832 58,232 51,713
Average length of genes (bp) 26,201 11,959 8834 8192 16,206 13,931
Average length of transcripts (nt) 1423 2067 1423 1479 1230 1178
Gene models supported by EST (%) 85.2 77.2 67.5 62.5 94.0 94.3
Exons No. of exons per gene 8.1 19.6 13.38 11.3 11.6 10.8
Average length (bp) 185 99.8 105 130 105.7 108.7
Total length (Mb) 126 82.1 98.2 97.3 71.6 60.9
Introns No. of genes with introns (%) 93.7 95.3 83.4 80.3 73.8 75.6
Average length (bp) 3468 499 561 622 1408.0 1296.0
First two nucleotides at 5′ splice sites GT/GC/GA GT/GC/GA GT/GC/GA GT/GC/GA GT/GC/GA GT/GC/GA
Total length (Mb) 1715 331.5 481.8 421.2 838.0 636.2