Fig. 5
From: Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
Reproducible definition of compartments is possible with as little as 18 genes. a Visualization of 20 compartments, with their annotations, defined by highly correlated clusters. Note that brain sections are slightly angled medial-lateral as well as dorso-ventral. Scale bar, 1 mm. b Hierarchical clustering of gene expression profiles based on correlation. Color coding according to regions listed at the bottom of the figure. Gene expression profiles for each cluster are defined by summing the expression of selected marker genes from all patches belonging to the cluster and normalizing by cluster size. Row colors represent sample id as defined by star and triangle markers in the top left corner for each brain section in a