Fig. 6
From: Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
Spatial variation in cell morphology. a Visualization of morphological variation in one brain section using RGB color space shows some distinct compartments, while others cannot be differentiated. Scale bar, 1 mm. b Spatial compartments defined by gene expression (visualized in Fig. 4) are clustered based on cosine similarity in morphological profiles, where the profiles are defined by summing the normalized morphological features of all patches belonging to the compartment and scaling each feature by compartment size