| v1 | v2 | v3 |
---|---|---|---|
Public release | 2013 | 2015 | 2018 |
Size (Mb) | 141 | 182 | 169 |
Ungapped size (Mb) | 138 | 161 | 163 |
Scaffolds (including mitochondrion) | 1132 | 3643 | 7 |
N count (size of gaps) | 2,484,793 | 21,388,553 | 6,486,653 |
Gaps | 3343 | 3767 | 85 |
Scaffold N50 (Mb) | 0.539 | 7.673 | 25.8 |
N90 (Mb) | 0.082 | 0.040 | 17.5 |
Contigs | 4475 | 7410 | 92 |
Contig N50 (Mb) | 0.075 | 0.063 | 5.81 |
N90 (Mb) | 0.016 | 0.010 | 1.21 |
GC content | 36% | 36% | 36% |
Gene models | 10,241 | 12,368 | 10,139 |
Transcripts including splice variants | 10,283 | 12,373 | 11,429 |
Avg. gene length (bp) | 1478 | 1398 | 1930 |
Exons/introns | 65,209/54,968 | 74,137/61,693 | 90,693/79,262 |
Avg. exons per transcript | 6.3 | 6.0 | 7.9 |
Avg. intron length (bp) | 863 | 851 | 866 |
Avg. exon length (bp) | 214 | 233 | 217 |
RNA-seq reads mapped to transcriptome | 99,295,156 | 104,204,808 | 109,485,265 |
Transcripts with < 10 RNA-seq reads mapping | 1116 | 1513 | 563 |
Transcripts with no RNA-seq read mapping | 568 | 707 | 193 |
1:1 orthologues with Echinococcus multilocularis | 5710 | 5967 | 6299 (62%) |
1:1 orthologues with Schistosoma mansoni | 4403 | 4539 | 4801 (47%) |