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Fig. 6 | BMC Biology

Fig. 6

From: Distinct nucleotide patterns among three subgenomes of bread wheat and their potential origins during domestication after allopolyploidization

Fig. 6

Determination of candidate genes for [AT] value of D subgenome. a Manhattan plot in the bread wheat population for [AT] value of D subgenome. Red arrows mark four signals identified in this study. Identification of candidate genes within top two association loci qATD-3A (b) and qATD-7D (c). The top of each panel shows the entire association locus identified by GWAS using 63 bread wheat accessions and LMM, and X-axis indicates the physical position (Mb) of the region in the bread wheat genome. Negative log10-transformed p values are plotted on the vertical axis, in which dots show positions and −log(p) values of all SNPs within this association locus. Gray horizontal line shows the threshold at −log(p) = 6, and dotted vertical line indicates flanks of association loci. At the bottom of each panel, LD heatmap is plotted to show the possible candidate internal of corresponding association locus. Red arrows show the position of candidate genes

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BMC Biology

ISSN: 1741-7007

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