Table 1 Assembly statistics across the four chromosomal races of the viatica species group. Pseudohaploid assemblies were analyzed without any size cutoff for contig or scaffold length
P24X0 male | P24XY male | P45bX0 male | P45bXY male | ||
|---|---|---|---|---|---|
Total millions of reads (2 × 150 bp) | 1883 | 1582 | 1759 | 1577 | 10X Genomics Chromium linked reads |
Molecule length (kb) | 41.18 | 17.44 | 56.11 | 30.44 | Average input molecule lengths |
Longest scaffold (kb) | 44.43 | 100.68 | 88.04 | 99.29 | |
Scaffold N50 (kb) | 316.69 | 34.85 | 51.83 | 36.43 | N50 scaffold size |
Edge N50 (kb) | 8.44 | 6.24 | 8.24 | 6.73 | N50 edge size |
Contig N50 (kb) | 35.69 | 26.94 | 33.34 | 29.11 | N50 contig size |
Phaseblock N50 (kb) | 651.54 | 50.13 | 115.56 | 53.56 | N50 phase block size |
Assembly GC content (%) | 37.99 | 37.93 | 38.09 | 38.01 | |
Reads aligned to reference (%) | 81.12 | 78.47 | 80.08 | 76.10 | |
Assembled genome size (Gb) | 3.02 | 2.73 | 3.27 | 2.94 | Supernova assembler |
Genome size estimation (Gb) | 3.30 | 3.36 | 3.52 | 3.82 | Supernova (computed from k-mer distributions) |
5.42 | 5.65 | 5.76 | 6.32 | FindGSE (computed from k-mer distributions) | |
Average genome size (Gb) | 4.26 | 4.50 | 4.64 | 5.07 | Based on k-mer distributions |