Fig. 2

Distribution of the numbers of orthologous and paralogous genes, gene orthology, and synteny in the A25 and A120 genomes. a Number of orthologous and paralogous genes defined by Best Reciprocal Hit (BRH) searches between A25 (blue), A120 (yellow), Amoebophrya AT5, P. falciparum, P. marinus, F. kawagutii, S. microadriaticum, and B. minutum predicted proteomes. b Violin distribution of the percent identity of orthologous genes defined by best reciprocal hits (BRHs) between Amoebophrya A120 (in peach), A25 (in dark), and a selection of other alveolates, including Amoebophrya strain AT5 (in brown). Diamonds represent median values for each distribution. c Dot-plot of the synteny observed between the longest scaffolds for each of the Amoebophrya A25 (x-axis, 53 scaffolds) and A120 (y-axis, 21 scaffolds) genomes. For each genome, genes are sorted by their rank on the scaffolds. Each dot represents a pair of orthologous genes defined by BRH. Blue lines highlight syntenic regions