|
Assembly
|
|
Number of scaffolds
|
557
|
50
|
2351
|
30,040
|
21,899
|
9695
|
17,897
|
|
Cumulative size (Mb)
|
116
|
115.5
|
87.7
|
935
|
609
|
808
|
87
|
|
Scaffold N50 / L50
|
1.082 Mb / 35
|
9.243 Mb / 5
|
83.9 kb / 298
|
381 kb / 772
|
125 kb / 1448
|
574 kb / 420
|
158 kb / 124
|
|
Scaffold N90 / L90
|
423 kb / 106
|
1.464 Mb / 18
|
19.6 kb / 1095
|
109 kb / 2477
|
31 kb / 5103
|
146 kb / 1442
|
1.2 kb / 9284
|
|
Scaffold max. size
|
3.013 Mb
|
16.512 Mb
|
537 kb
|
1.914 Mb
|
811 kb
|
3.145 Mb
|
1.8 Mb
|
|
%N
|
2.27
|
1.41
|
2.25
|
3.4
|
0.9
|
7.7
|
0.64
|
|
%GC
|
47.8
|
51.2
|
55.92
|
45.5
|
43.5
|
50.5
|
47.4
|
|
Genes
|
|
Number
|
28,091
|
26,441
|
19,925
|
31,520
|
32,803
|
29,728
|
23,654
|
|
Density (genes/Mb)
|
247.78
|
232.18
|
227.2
|
39.4
|
68.78
|
60.8
|
273.1
|
|
Average length (bp)
|
2965
|
3482
|
2782
|
8836
|
10,069
|
9281
|
1581
|
|
Median length (bp)
|
1890
|
2442
|
1803
|
2039
|
7899
|
7255
|
1038
|
|
Exons
|
|
Number
|
117,411
|
121,327
|
67,639
|
150,118
|
985,369
|
1,072,528
|
133,410
|
|
Av. length (bp)
|
475
|
541
|
578
|
256
|
99
|
109
|
177
|
|
Median length (bp)
|
235
|
265
|
319
|
81
|
53
|
51
|
112
|
|
Longest (bp)
|
79,744
|
44,016
|
14,772
|
11,064
|
14,818
|
13,755
|
16,293
|
|
Average number of exons / gene
|
4.18
|
4.59
|
3.39
|
4.07
|
20.96
|
21.8
|
5.64
|
|
% GC
|
51.9%
|
56.3%
|
54.7%
|
52.7%
|
50.8%
|
56.9%
|
50.95%
|
|
Introns
|
|
Number
|
81,610
|
90,882
|
47,714
|
113,268
|
938,355
|
1,023,342
|
109,756
|
|
% of spliced genes
|
69.8%
|
66.9%
|
71.3%
|
64.1%
|
95.4%
|
98.6%
|
72.4%
|
|
Average length (bp)
|
345
|
335
|
337
|
893
|
517
|
505
|
124
|
|
Median length (bp)
|
208
|
247
|
228
|
501
|
297
|
231
|
49
|
|
Longest (bp)
|
90,415
|
35,152
|
3556
|
9977
|
88,176
|
177,825
|
11,034
|
|
% GC
|
44%
|
46.5%
|
49.4%
|
44.5%
|
41.8%
|
47.1%
|
43.4%
|
|
% of introns with GT-AG splice sites
|
34.02%
|
30.41%
|
99.98%
|
65.38%
|
48.23%
|
0.26
|
99.3%
|
|
% of introns with GC|GA-AG splice sites
|
0.45%
|
2.95%
|
0.02%
|
25.30%
|
51.77%
|
73.95%
|
0.7%
|
|
% of introns with other splices sites
|
65.53%
|
66.64%
|
0%
|
9.32%
|
0%
|
0.05%
|
0%
|
|
CDS
|
|
Average coding size (bp)
|
1337
|
1773
|
1962
|
1041
|
1916
|
2375
|
4839
|
|
Genome coverage of coding bases, % in brackets
|
32.4%
|
40.6%
|
44.6%
|
4.1%
|
13.1%
|
14.4%
|
26.4%
|
|
Gene families
|
|
Number of genes belonging to families, % in brackets
|
7074 (25.2)
|
7428 (28.1)
|
ND
|
20,374 (55.3)
|
25,809 (61.5)
|
32,796 (66.8)
|
18,258 (77.2)
|
|
Avg. of genes in a family
|
3.5
|
3.6
|
ND
|
6.7
|
5.9
|
7
|
ND
|
|
Max. of genes in a family
|
171
|
157
|
ND
|
889
|
703
|
831
|
ND
|
|
Annotation
|
|
Number of proteins with at least one significant match
|
8360
|
8690
|
4366
|
29,720
|
13,813
|
5538
|
ND
|
|
Number of proteins with KO assignation
|
5774 (21%)
|
5983 (23%)
|
2018
|
14,926 (40%)
|
10,954 (65%)
|
3008 (54%)
|
ND
|
|
Number of proteins with BRITE assignation
|
5774
|
5856
| |
14,764
|
10,755
|
2960
|
ND
|
|
Number of proteins of with an IPR domains
|
8444
|
9054
|
7404
|
16,895
|
13,541
|
4059
|
ND
|
|
Number of proteins with UniProt matches (%)
|
9101 (32.4)
|
9404 (35.6)
|
ND
|
ND
|
ND
|
ND
|
ND
|
