Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics

Table 3 Results of Four-cluster Likelihood Mapping with original and permuted datasets testing Ephydroidea, Tephritoidea, and Calyptratae

1—Ephydroidea	Original	Permut. 1	Permut. 2	Permut. 3
A—Ephydroidea + Calyptratae	66.7	22.2	33.6	18.8
B—Tephritoidea + Calyptratae	17.3	32.1	34	40.8
C—Ephydroidea + Tephritoidea	15.4	30.2	19.8	23.1
Equivocal A or B	0.6	4.6	6.2	3.7
Equivocal B or C	0	6.8	4	7.7
Equivocal A or C	0	4	2.2	4.9
Equivocal all three quartets	0	0	0.3	0.9

The sister group relationships of these three major lineages with Syrphidae as an unequivocal outgroup. Numbers are proportions of quartets supporting the respective quartet topology in percentages. For group definitions, see Additional file 9, Table S6

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