Fig. 5.
A 120-kb (Chr 6: 21,729,370–21,849,500 bp, based on GRCg6a reference) introgressed region from the Grey junglefowl into the domestic chicken. A fd plot. B Twisst plot (B1 its topologies and B2 their proportions). The most consistent topology (80%) has a monophyletic relationship between targetDom (introgressed domestic haplotypes) and Grey junglefowl. C dxy and D Fst. Eth, Sau, SriLanka, and SE + E are domestic chickens from Ethiopia, Saudi Arabia, Sri Lanka, and Southeast Asia (Indonesia) + East Asia (China), respectively. targetDom are the introgressed domestic chicken haplotypes from Grey junglefowl (GreyJ) denoted as (*) in E haplotype-based network and F maximum likelihood tree