Linked-read sequencing identifies abundant microinversions and introgression in the arboviral vector Aedes aegypti

Table 1 Colonies

Colony	Spp./sub-spp.	Collection year	Collection location	Gens in colony	No. founders	Previously published
Liverpool_Aae	Ae. aegypti aegypti	–	–	Unknown*	–	Matthews et al. [34]
USA_Aae	Ae. aegypti aegypti	2014	New Orleans, USA	7	4 females	Powell and Evans [44]
Thailand_Aae	Ae. aegypti aegypti	2015	Muang district, Thailand	3	> 500 larvae
Kenya_Aae	Ae. aegypti aegypti	2009	Rabai, Kenya	19	3 females	McBride et al. [40]
Kenya_Hyb	Aaa/Aaf hybrid	2009	Rabai, Kenya	14	2 females	McBride et al. [40]
Kenya_Aaf	Ae. aegypti formosus	2009	Rabai, Kenya	11	9 females	McBride et al. [40]
Uganda_Aaf	Ae. aegypti formosus	2015/2016	Zika, Uganda	4	~ 100 inds, from 2 ovitraps
Gabon_Aaf	Ae. aegypti formosus	2016	Franceville, Gabon	2	~ 10 mated females from multiple sites
Mascarensis	Ae. mascarensis	2014	Mauritius	2	10 females

*The Liverpool colony was founded circa 1935 and has undergone a large but unknown number of generations. The precise collection location and numbers of founders are not known. Our samples are the same generation used in Matthews et al. [34]

ISSN: 1741-7007