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Table 1 Transcripts for putative starch-degrading enzymes in S. multiformis and the presence/absence of corresponding orthologs in other unicellular holozoan lineages and Metazoa

From: Insights into the origin of metazoan multicellularity from predatory unicellular relatives of animals

 

S. multiformis

Ichthyosporea

Filasterea

Choanoflagellates

Metazoa

α-Amylases (PF00128)

 1

Colp12_sorted@267, Colp12_sorted@268, Colp12_sorted@269

Pirum_gemmata@Unigene16826_1*

Ministeria_vibrans@37663/4*

Craspedida_sp_A TCC_50635@246766*

NA

 2

Colp12_sorted@19603

NA

NA

NA

NA

 3

Colp12_sorted@18987, Colp12_sorted@16467, Colp12_sorted@17178

Pirum_gemmata@Unigene17488_1

Ministeria_vibrans@28157

Salpingoeca_rosetta@00083T0

Amphimedon_queenslandica@15720304

 4 = paralog to 3

Colp12_sorted@8715

See 3

See 3

See 3

See 3

 5 (SLC3A1)

Colp12_sorted@10150

NA

NA

Salpingoeca_rosetta@08827T0

Homo_sapiens@ENSP00000260649

α-Glucosidases (PF01055)

 1

Colp12_sorted@9290, Colp12_sorted@22295

Pirum_gemmata@Unigene@34248_1*

Ministeria_vibrans@34861

Salpingoeca_rosetta@00005T0*

NA

 2

Colp12_sorted@1339, Colp12_sorted@1341

Creolimax_fragrantissima@8464T1

Capsaspora_owczarzaki@04827T0

NA

Amphimedon_queenslandica@15725226

 3 = paralog to 2

Colp12_sorted@9196, Colp12_sorted@14409, Colp12_sorted@18957, Colp12_sorted@21457, Colp12_sorted@31517

See 2

See 2

NA

See 2

 4. (GANAB/GANC)

Colp12_sorted@13767

Creolimax_fragrantissima@4769T1

Capsaspora_owczarzaki@00308T0

Salpingoeca_rosetta@11360T0

Homo_sapiens@ENSP00000326227/ENSP00000349053/ENSP00000340466

Glycogen phosphorylase (PYGB/PYGL/PYGM)

 1

Colp12_sorted@1564

Creolimax_fragrantissima@2598T1

Capsaspora_owczarzaki@07395T0

Salpingoeca_rosetta@08531T0

Homo_sapiens@ENSP00000216392/ENSP00000216962/ENSP00000164139

Glycogen debranching enzyme (AGL)

 1

Colp12_sorted@14615

Creolimax_fragrantissima@4755T1

Capsaspora_owczarzaki@06406T0

Salpingoeca_rosetta@10237T0

Homo_sapiens@ENSP00000355106

  1. Accession numbers for S. multiformis are from the corresponding TransDecoder output files as described in Hehenberger et al. [37]; sequence identifiers for all other taxa correspond to the deposited alignments/phylogenies. Pfam domains used to identify candidates in S. multiformis and/or annotated direct human orthologous genes are indicated in brackets in column 1. NA, no direct orthologs recovered in our dataset; transcript identifiers in italic, short fragment(s) of one lineage representative
  2. *Unclear whether sequences are direct orthologs or paralogs to S. multiformis (unresolved tree)