From: Assessing optimal: inequalities in codon optimization algorithms
Vendor algorithm | Median frequency | Mean frequency | CAI | %GC | %GC3 | %Min window |
---|---|---|---|---|---|---|
Native DNA | 0.339 | 0.370 | 0.61 | 37.7 | 30.2 | 65 |
IDT | 0.373 | 0.391 | 0.68 | 45.1 | 50.0 | 27 |
Twist | 0.373 | 0.399 | 0.70 | 51.5 | 67.0 | 17 |
DNA 2.0a | 0.404 | 0.431 | 0.69 | 51.8 | 63.0 | 0 |
GeneWiz | 0.418 | 0.446 | 0.79 | 54.0 | 73.6 | 7 |
Genscript | 0.425 | 0.458 | 0.82 | 54.0 | 73.6 | 6 |
JCAT | 0.429 | 0.470 | 0.84 | 46.4 | 50.0 | 0 |
OPTIMIZER | 0.429 | 0.479 | 0.87 | 48.0 | 54.9 | 0 |
GeneArt | 0.495 | 0.496 | 0.88 | 42.5 | 37.9 | 0 |
COOL | 0.509 | 0.529 | 0.97 | 48.1 | 55.5 | 0 |