Table 1 Identification, validation, and function of 21 protein-coding genes in the B chromosomes from the studied species
From: Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish
A. scabripinnis | A. paranae | qPCR | ||||||
|---|---|---|---|---|---|---|---|---|
Gene | gFC | qPCR | SNPs | gFC | qPCR | A. bockmanni | A. fasciatus | Function |
amhr2 | 1.8 | 1 | 7 | 0.9 | 1 | 0 | 1 | Gonadal development |
bt1a1 | 1.7 | 1 | 0 | − 0.4 | 1 | 0 | 0 | Unknown |
ccnd3 | 1.2 | 1 | 0 | −0.1 | 0 | 0 | 0 | Cell cycle |
ccpg1 | 0.9 | 1 | 9 | 1.3 | 1 | 1 | 0 | Cell cycle |
cia30 | 7.0 | 1 | 0 | 7.9 | 1 | 1 | 1 | Mitochondrial |
g2e3 | 5.7 | 1 | 0 | 5.0 | 1 | 1 | 1 | Cell cycle |
hem2 | 1.8 | 1 | 3 | 0.9 | 1 | 1 | 0 | Biosynthesis |
lap4a | 1.5 | 1 | 0 | 1.1 | 1 | 1 | 0 | Transport |
mdm2 | 2.0 | 1 | 0 | 1.9 | 1 | 0 | 1 | Indirect cell cycle regulation |
mot1 | 1.0 | 1 | 1 | 1.6 | 1 | 1 | 0 | Transport |
msh4 | 1.6 | 1 | 21 | 1.4 | 1 | 1 | 1 | Cell cycle |
nobox | 1.7 | 1 | 5 | 3.1 | 1 | 1 | 0 | Cell cycle |
numa1 | 2.7 | 1 | 0 | 2.5 | 1 | 1 | 1 | Cell cycle |
nusap1 | 7.3 | 1 | 0 | 3.9 | 1 | 1 | 1 | Cell cycle |
rnf17 | 1.3 | 1 | 2 | 1.9 | 1 | 1 | 1 | Indirect cell cycle regulation |
sbno2 | 5.9 | 1 | 0 | 6.8 | 1 | 1 | 1 | Transcriptional coregulator |
sh3d21 | 1.5 | 1 | 34 | 1.6 | 1 | 1 | 1 | Unknown |
simc1 | 3.1 | 1 | 25 | 2.0 | 1 | 1 | 1 | Transcription factor |
slc5a8 | 1.0 | 1 | 5 | 1.6 | 1 | 0 | 0 | Transport |
tshb | 0.7 | 1 | 2 | 1.7 | 1 | 0 | 0 | Hormone-mediated signaling pathway |
urok | 0.4 | 0 | 0 | 2.3 | 1 | 0 | 0 | Plasminogen activation |
Sum | 20 | 114 | 20 | 14 | 11 | |||