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Table 1 The seven Symbiodinium isolates for which de novo genome assemblies were generated in this study

From: Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium

 

S. microadriaticum CassKB8

S. microadriaticum 04-503SCI.03

S. tridacnidorum CCMP2592*

S. linucheae CCMP2456

S. necroappetens CCMP2469

S. natans CCMP2548*

S. pilosum CCMP2461

ITS2 subtype

A1

A1

A3

A4

A13

–

A2

Lifestyle

Symbiotic

Symbiotic

Symbiotic

Symbiotic

Opportunistic

Free-living

Free-living

Host or source of origin

Cassiopea sp. (jellyfish)

Orbicella faveolata

(stony coral)

Heliofungia actiniformis (stony coral)

Plexaura homamalla (octocoral)

Condylactis gigantea (anemone)

Open ocean

Zoanthus sociatus (zoanthid)

Collection site

Hawaii (Pacific)

Florida (Atlantic)

Coral Sea (Pacific)

Bermuda (Atlantic)

Jamaica (Caribbean)

Hawaii (Pacific)

Jamaica (Caribbean)

Overall G+C (%)

51.91

50.46

51.01

50.36

50.85

51.79

48.21

Number of scaffolds

67,937

57,558

6245

37,772

104,583

2855

48,302

Assembly length (bp)

813,744,491

775,008,844

1,103,301,044

694,902,460

767,953,253

761,619,964

1,089,424,773

N50 scaffold length (bp)

42,989

49,975

651,264

58,075

14,528

610,496

62,444

Max. scaffold length (Mbp)

0.38

1.08

4.01

0.46

1.34

3.40

1.34

Number of contigs

167,159

162,765

7913

141,380

157,685

4262

142,969

N50 contig length (bp)

10,400

11,136

356,695

11,147

11,420

358,021

17,506

Max. contig length (Mbp)

0.15

1.05

2.96

0.19

1.34

2.90

1.34

Gap (%)

1.15

1.44

0.02

1.35

0.56

0.02

0.79

Estimated genome size (bp)

1,120,150,369

1,052,668,212

1,287,259,774

914,781,885

1,007,022,374

740,100,732

1,993,912,458

Assembled fraction of genome (%)

72.65

73.62

85.71

75.96

76.26

100.03

54.64

  1. An asterisk (*) denotes a hybrid genome assembly incorporating both short- and long-read sequence data. All other assemblies were generated using short-read sequence data