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Table 2 Genome assembly characteristics of five Plasmodium vinckei reference genomes. AT-rich P. vinckei genomes are 19.2 to 19.5 megabasepairs (Mb) long except for PvvCY which has a smaller genome size of 18.3 Mb, similar to Plasmodium berghei. PacBio long reads allowed for chromosomes to be assembled as gapless unitigs with a few exceptions. Number of genes include partial genes and pseudogenes. Copy numbers of the ten multigene families differ between the P. vinckei subspecies (ema1, erythrocyte membrane antigen 1; etramp, early transcribed membrane protein; hdh, haloacid dehalogenase-like hydrolase; lpl, lysophospholipases; p235, reticulocyte-binding protein; pir, Plasmodium interspersed repeat protein)

From: Plasmodium vinckei genomes provide insights into the pan-genome and evolution of rodent malaria parasites

Nuclear genome features

P. vinckei vinckei

CY

P. vinckei brucechwatti

DA

P. vinckei lentum

DE

P. vinckei petteri

CR

P. vinckei subsp.

EL

Genome size (Mb)

18.34

19.17

19.31

19.39

19.50

G+C content (%)

22.94

23.17

23.33

23.19

23.16

Gaps within assembly

0

0

7

0

11

Genes

5042

5238

5249

5310

5307

Pseudogenes

19

40

29

36

36

ema1

7

20

19

15

21

etramp

12

12

11

13

12

fam-a

87

187

201

188

207

fam-b

28

38

41

40

44

fam-c

20

59

63

64

65

fam-d

6

13

27

21

21

hdh

7

9

12

13

14

lpl

25

23

24

23

17

p235

5

8

7

6

8

pir

178

209

210

272

247