Fig. 1

Phylogeny of Apicomplexa. Maximum likelihood phylogeny of apicomplexans as recovered from two independently developed phylogenomic datasets, which both recovered identical topologies. Branch lengths shown are from dataset A. Dataset A was comprised of 246 genes and 63,201 sites, while dataset B was comprised of 299 genes and 89,675 sites. Non-parametric PMSF bootstrap support (BS) values (n = 1000) and Phylobayes posterior probabilities (PP) are shown on the branches as follows: dataset A BS/dataset B BS/dataset A PP/dataset B PP. Branches with black circles received maximum support in all analyses. Support values below 80 BS or 0.9 PP are not shown. Gregarines newly sequenced in this study are bolded and colored blue