Table 1 Candidate sRNAs analysed by Northern blotting (NB)
From: Methyltransferase-directed orthogonal tagging and sequencing of miRNAs and bacterial small RNAs
Group | Name | Verified by NB | |
|---|---|---|---|
sRNAs predicted in all libraries | Intergenic | sLCB577.2− | + |
sLCB761− | + | ||
sLCB1299+ | + | ||
sLCB1806− | + | ||
sLCB2150− | + | ||
sLCB2545+ | + | ||
sLCB2784+ | + | ||
sLCB2938+ | + | ||
Antisense | sLCB561+ | + | |
sLCB568− | + | ||
sLCB2773+ | + | ||
sLCB2785+ | + | ||
sLCB3035− | + | ||
5′ UTR-derived | sLCB724+ | + | |
sLCB922+ | + | ||
sLCB1856− | + | ||
sLCB2097+ | + | ||
3′ UTR-derived | sLCB266.5+ | + | |
sLCB1674− | + | ||
sLCB2321− | + | ||
sLCB3076− | + | ||
Mixed - 3′ UTR-derived/5′ UTR-derived | sLCB1312+ | + | |
Mixed - 3′ UTR-derived/antisense | sLCB2083+ | + | |
sRNAs predicted only in the N library | Intergenic | sLCB1735− | + |
5′ UTR-derived | sLCB616+ | + | |
3′ UTR-derived | sLCB3+ | − | |
sLCB518− | − | ||
sLCB1192− | − | ||
sLCB1398+ | + | ||
sLCB1968− | + | ||
sLCB2960− | + | ||
Mixed - 3′ UTR-derived/antisense | sLCB1933− | − | |
sLCB2710+ | − |