Phylotranscriptomics points to multiple independent origins of multicellularity and cellular differentiation in the volvocine algae

Lindsey, Charles Ross; Rosenzweig, Frank; Herron, Matthew D.

doi:10.1186/s12915-021-01087-0

Table 1 List of taxa used in this study and summary of sequencing and assembly. Under Strain or Pubmed ID, “CC” refers to Chlamydomonas Culture Collection at the University of Minnesota (CC, USA), “F” refers to Culture Collection of Freshwater Algae at the Institute of Hydrobiology, Chinese Academy of Sciences (FACHB, China), “N” refers to National Institute for Environmental Studies (NIES, Japan), “S” refers to Culture Collection of Algae at the University of Göttingen (SAG, Germany), and “U” refers to The Culture Collection of Algae at the University of Texas at Austin (UTEX, USA). “QRPMK” and “TR” under RNA Extraction Method refer to QIAGEN RNeasy Plant Mini Kit and TRizol RNeasy, respectively. Strains assigned an asterisk represent data from previously published studies, with accession numbers shown in Supplementary Materials: Table S1 [21, 47]

From: Phylotranscriptomics points to multiple independent origins of multicellularity and cellular differentiation in the volvocine algae

Taxa	Strain or Pubmed ID	RNA extraction method	Total # of raw reads	Total # of clean PE reads	Total # of Contigs	N50	G/C %
Astrephomene gubernaculifera	N-418	QRPMK	61460551	44350080	78105	3894	0.61
A. perforata	N-564	QRPMK	63350620	46811342	72913	3613	0.61
Basichlamys sacculifera	N-566	QRPMK	66205749	48327288	134880	1945	0.69
Colemanosphaera angeleri	F 2363*		28119810	27000176	120763	3348	0.62
C. charkowiensis	F 2326*		27967726	26876865	103286	3382	0.62
	N-3383	TR	58777161	40550696	119848	2523	0.62
Chlamydomonas debaryana	S 11-55a	QRPMK	87455695	64552440	105096	2776	0.67
	S 70.81	QRPMK	50406749	42095108	103962	2858	0.64
C. globosa	S 81.72	TR	73820020	49419928	120062	2079	0.65
C. moewusii	S 11-16f	QRPMK	54728573	40436359	118833	2498	0.6
C. reinhardtii	CC-503*
C. schloesseri	S 2486	QRPMK	70163393	49255021	64233	3094	0.66
Chlorella variabilis NC64a	20852019*
Eudorina cylindrica	F 2322*		26442110	25262148	103026	2846	0.64
	N-722	QRPMK	44479173	36297801	105029	2927	0.64
E. elegans	F 2321*
	N-456	TR	84549961	56756776	122975	2108	0.63
	N-458	QRPMK	67451343	46725012	131335	2944	0.65
	N-568	QRPMK	83433797	69539684	120487	3614	0.64
	N-717	QRPMK	47625429	37616922	89118	2094	0.64
	N-719	QRPMK	57157324	43565312	98180	2976	0.63
	N-720	QRPMK	38134498	31388413	95662	3699	0.61
E. illinoisensis	N-460	QRPMK	62485922	49396583	97014	2615	0.64
E. minodii	N-856	QRPMK	83574258	66413244	128802	4127	0.61
E. peripheralis	N-725	QRPMK	46607143	36528930	100934	2322	0.62
E. unicocca	S 24-1c	TR	54482446	37679863	110391	2267	0.62
Gonium multicoccum	N-737	QRPMK	65984190	44301578	122279	3275	0.64
G. pectorale	N-2863*
G. octonarium	N-851	TR	60029472	39826211	104857	2302	0.65
G. quadratum	N-653	QRPMK	62431743	48230702	100468	3789	0.64
G. viridistellatum	N-654	QRPMK	43286980	31852410	97991	2837	0.65
Pandorina colemaniae	F 2361*		25181003	23823370	80843	3292	0.62
	N-572	TR	49862534	37589048	84053	2237	0.62
P. morum	F 2362*		29837807	28442854	147990	2674	0.61
	N-890	QRPMK	39337532	24490235	133742	3123	0.61
Platydorina caudata	N-728	QRPMK	48702213	36896556	125206	3503	0.61
Pleodorina indica	N-736	QRPMK	57564627	44082516	192570	2006	0.63
P. japonica	U 2523	QRPMK	64897803	49495315	83662	3499	0.61
P. starrii	N-1362	TR	68790016	45935282	87641	2438	0.64
	N-1363	TR	59466876	44726861	128732	1695	0.63
P. thompsonii	N-4126	QRPMK	81077847	61986735	118940	4005	0.62
Tetrabaena socialis	N-571*		42302450	41232209	62014	1012	0.65
Vitreochlamys aulata	N-878	QRPMK	80710519	54651118	132115	2673	0.65
	S 80.81	QRPMK	41008694	32585611	84834	2100	0.65
V. nekrassovii	S 11-10	QRPMK	65658295	48341108	109360	3304	0.62
V. ordinata	N-882	TR	60631467	42981449	75434	2778	0.69
Volvox africanus	N-863	QRPMK	70739371	52378949	110066	4586	0.55
V. aureus	N-541	QRPMK	80821130	64315625	106245	4065	0.55
V. barberi	N-730	QRPMK	49805303	37197105	152910	2217	0.58
V. carteri f. kawasakiensis	N-732	TR	53994112	34239609	86004	1982	0.58
V. carteri f. nagariensis	20616280*
	N-865	QRPMK	65624222	50641434	117314	3947	0.57
V. carteri f. weismannia	N-866	QRPMK	25913610	20987137	78230	2636	0.57
V. dissipatrix	N-4128	QRPMK	77137081	51045569	112190	5146	0.55
V. ferrisii	N-3986	QRPMK	49810357	37522413	91045	3281	0.57
V. gigas	N-867	QRPMK	50554912	37592146	151302	2499	0.63
V. globator	S 199.80	QRPMK	67413919	52861449	100861	4005	0.56
V. kirkiorum	N-543	QRPMK	44941633	34650729	89533	3081	0.56
V. obversus	N-868	QRPMK	67394604	50823546	99171	3881	0.58
V. ovalis	N-2569	QRPMK	52242003	35319700	107999	3643	0.53
V. powersii	N-4127	QRPMK	55232784	42410688	140237	2908	0.62
V. tertius	N-544	QRPMK	86222840	62563240	108551	5454	0.54
Volvulina boldii	N-893	QRPMK	25665262	20161297	158265	1593	0.62
V. compacta	F 2337*		27543035	26374210	90261	3550	0.61
	N-582	QRPMK	53045384	38991781	112583	3380	0.63
V. pringsheimii	N-895	TR	82233959	55849890	128304	3122	0.62
V. steinii	S 90-1	QRPMK	46133638	37699635	89515	3635	0.62
Yamagishiella unicocca	F 2364*		30922957	29574420	64415	3609	0.63

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